PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04189-snap-gene-0.19-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 177aa    MW: 20104.6 Da    PI: 9.8509
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04189-snap-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.3e-3399157159
                                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                                ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg H h+
  maker-scaffold04189-snap-gene-0.19-mRNA-1  99 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEAIVVTTYEGMHSHP 157
                                                59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-3484157IPR003657WRKY domain
SuperFamilySSF1182907.59E-3091158IPR003657WRKY domain
PROSITE profilePS5081130.18294159IPR003657WRKY domain
SMARTSM007744.0E-3999158IPR003657WRKY domain
PfamPF031064.8E-27100157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MENYSTYFSS SSSTPPTSSL TLSMADSHAY NEFQGIKSNG FLGLMSQMGV SAVSNIDVPQ  60
SRSFIVGSET DVNSGKKKGE KKIRKPRYAF QTRSQVDILD DGYRWRKYGQ KAVKNNKFPR  120
SYYRCTHQGC NVKKQVQRLT KDEAIVVTTY EGMHSHPIEK STDNFEHILS QMQIYTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A1e-2889158776Probable WRKY transcription factor 4
1wj2_A1e-2889158776Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226197.14e-94hypothetical protein PRUPE_ppa016153mg
SwissprotQ9FYA26e-59WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLM5XPE94e-94M5XPE9_PRUPE; Uncharacterized protein
STRINGPOPTR_0003s16750.13e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.11e-59WRKY DNA-binding protein 75